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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
total RNA-seq
172
ChIP-seq
ATAC-seq
11
DNase-seq
8
WGBS
6
single cell RNA-seq
5
Hi-C
3
pCHi-C
3
small RNA-seq
1
FAIRE-seq
1
RNA microarray
0
MeRIP-seq
Assay category
172
DNA binding
Target of assay
102
histone
102
histone modification
65
broad histone mark
45
control
37
narrow histone mark
25
transcription factor
9
RNA binding protein
Date released
50
August, 2017
50
May, 2019
40
October, 2019
23
October, 2018
6
February, 2021
3
November, 2017
Available data
136
bam
95
bigWig
80
bed narrowPeak
75
bigBed narrowPeak
40
fastq
14
tagAlign
5
bed broadPeak
4
bed bed3+
4
bigBed broadPeak
Organism
172
Homo sapiens
Biosample type
146
tissue
20
primary cell
6
cell line
Organ
552
liver
228
pancreas
218
brain
153
connective tissue
135
epithelium
134
heart
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
172
AMP
Genome assembly (visualization)
95
hg19
91
GRCh38
Lab
172
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
tibial artery
23
ascending aorta
16
thoracic aorta
16
aorta
13
+ See 5 more…
primary cell
endothelial cell of umbilical vein
17
brain microvascular endothelial cell
3
cell line
smooth muscle cell of the coronary artery
6
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