Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
DNA methylation
1
DNA sequencing
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
1
August, 2021
1
May, 2021
Available data
1
vcf
Organism
12
Homo sapiens
Biosample type
7
cell line
4
tissue
1
primary cell
Organ
10
pancreas
6
epithelium
1
liver
Project
12
AMP
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
1
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
12 results
search-icon
table-tab-icon
Clear Filters
MeRIP-seq
DNAme array
whole genome sequencing assay
cell line
EndoC_BH1
6
HepG2
1
tissue
islet of Langerhans
4
primary cell
monocyte
1
Download