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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
84
February, 2021
10
November, 2020
5
January, 2018
2
December, 2019
1
August, 2021
Available data
84
txt
5
bigWig
5
fastq
2
tsv
Organism
101
Homo sapiens
Biosample type
91
tissue
6
cell line
4
in vitro differentiated cells
1
stem cell
Organ
84
bone element
10
pancreas
7
epithelium
2
kidney
1
adipose tissue
1
connective tissue
1
embryo
Project
102
AMP
Genome assembly (visualization)
5
hg18
Lab
92
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
90
inconsistent ontology term
2
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
102 results
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RNA microarray
MeRIP-seq
GRO-seq
tissue
bone element
84
islet of Langerhans
4
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
cell line
EndoC_BH1
6
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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