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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1792
ChIP-seq
1527
total RNA-seq
ATAC-seq
362
single cell RNA-seq
179
DNase-seq
87
RNA microarray
83
snATAC-seq
74
WGBS
56
pCHi-C
28
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
16
July, 2019
10
November, 2020
Available data
16
bam
16
bigWig
16
tsv
Organism
26
Homo sapiens
Biosample type
19
tissue
6
cell line
1
primary cell
Organ
12
pancreas
6
epithelium
4
brain
3
adipose tissue
3
connective tissue
3
liver
musculature of body
1
heart
1
kidney
Project
26
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
16
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
26 results
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small RNA-seq
MeRIP-seq
tissue
islet of Langerhans
4
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
+ See 9 more…
cell line
EndoC_BH1
6
primary cell
mesenchymal stem cell of adipose
1
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