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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
3
control
3
nucleotide modification
Date released
6
November, 2020
4
March, 2020
1
February, 2021
1
May, 2020
Available data
5
tsv
1
bed bed3+
Organism
12
Homo sapiens
Biosample type
29
tissue
17
primary cell
12
cell line
5
in vitro differentiated cells
4
stem cell
Organ
6
epithelium
6
pancreas
2
kidney
2
liver
1
mammary gland
Project
12
AMP
Genome assembly (visualization)
1
hg19
Lab
6
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
12 results
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MeRIP-seq
pCHi-C
cell line
EndoC_BH1
6
HepG2
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
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