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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
nucleotide modification
Date released
5
January, 2018
5
November, 2020
Available data
5
bigWig
5
fastq
Organism
10
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
cell line
2
tissue
1
stem cell
Organ
5
pancreas
3
epithelium
1
embryo
Project
10
AMP
Genome assembly (visualization)
5
hg18
Lab
5
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
10 results
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GRO-seq
MeRIP-seq
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
cell line
EndoC_BH1
3
tissue
islet of Langerhans
2
stem cell
hESC
1
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