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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
907
ChIP-seq
255
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
255
DNA accessibility
Target of assay
2
control
2
nucleotide modification
Date released
74
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
6
July, 2019
4
March, 2019
4
November, 2020
2
August, 2017
2
January, 2018
2
March, 2020
Available data
208
bed narrowPeak
64
bam
64
xls
43
bigWig
29
fastq
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
259
Homo sapiens
Biosample type
259
tissue
199
primary cell
37
in vitro differentiated cells
34
cell line
Organ
75
kidney
66
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
epithelium
8
bone element
8
limb
8
skeleton
6
adipose tissue
6
connective tissue
3
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
248
AMP
11
T1D
Genome assembly (visualization)
158
GRCh38
117
hg19
Lab
126
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
Capture-C
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
259 results
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ATAC-seq
MeRIP-seq
tissue
kidney
75
islet of Langerhans
68
4
coronary artery
36
liver
20
retina
15
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