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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1818
ChIP-seq
1531
total RNA-seq
527
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
55
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
8
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
5
August, 2017
3
October, 2019
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
bed bed3+
12
fastq
Organism
18
Homo sapiens
Biosample type
7
cell line
6
tissue
4
primary cell
1
in vitro differentiated cells
Organ
11
pancreas
9
epithelium
3
kidney
1
connective tissue
1
liver
Project
18
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
8
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
Capture-C
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
18 results
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Clear Filters
MeRIP-seq
DNase-seq
cell line
EndoC_BH1
6
glomerular visceral epithelial cell
1
tissue
islet of Langerhans
4
1
right lobe of liver
1
primary cell
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
in vitro differentiated cells
adipocyte
1
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