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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
1014
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
187
June, 2019
11
November, 2020
10
October, 2019
2
August, 2017
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
fastq
Organism
210
Homo sapiens
Biosample type
172
tissue
30
primary cell
8
cell line
Organ
81
kidney
36
limb
33
musculature of body
30
brain
30
heart
25
epithelium
18
ureter
15
pancreas
11
vasculature
9
blood vessel
7
connective tissue
4
artery
4
eye
3
liver
2
nerve
2
vein
1
adipose tissue
Project
210
AMP
Genome assembly (visualization)
196
GRCh38
174
hg19
Lab
200
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
assay_title!
Capture-C
files.file_type!
fastq
BIOSAMPLE
ASSAY
210 results
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Clear Filters
DNase-seq
MeRIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 38 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
EndoC_BH1
6
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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