Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
89
DNA accessibility
21
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
27
February, 2021
22
May, 2022
17
July, 2019
16
January, 2021
10
April, 2020
10
November, 2020
7
August, 2017
6
August, 2021
2
February, 2023
1
August, 2022
1
November, 2018
1
October, 2019
Available data
33
fastq
21
zippedFastqFolder
19
bed bedMethyl
19
bigBed bedMethyl
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
bed bed3+
1
tar
1
txt
Organism
119
Homo sapiens
Biosample type
67
primary cell
47
tissue
6
cell line
Organ
25
pancreas
13
epithelium
11
kidney
10
lung
8
blood
8
bodily fluid
6
musculature of body
3
brain
2
heart
2
liver
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
pericardium
1
vein
Project
48
HPAP
44
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
25
hg19
Lab
48
Klaus Kaestner, Upenn
28
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
8
inconsistent ontology term
assay_title!
Capture-C
BIOSAMPLE
ASSAY
120 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
RRBS
MeRIP-seq
FAIRE-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 8 more…
tissue
islet of Langerhans
7
1
4
1
lung
10
kidney
6
1
1
pancreas
4
1
1
skeletal muscle tissue
1
4
+ See 5 more…
cell line
EndoC_BH1
6
See all biosamples
Download