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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
4
August, 2021
Available data
2
bed bed3+
Organism
14
Homo sapiens
Biosample type
8
cell line
4
tissue
2
in vitro differentiated cells
Organ
12
pancreas
8
epithelium
2
connective tissue
Project
14
AMP
Genome assembly (visualization)
2
hg19
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
2
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent ontology term
assay_title!
STARR-seq
ChIP-seq
BIOSAMPLE
ASSAY
14 results
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MeRIP-seq
Capture-C
cell line
EndoC_BH1
6
2
tissue
islet of Langerhans
4
in vitro differentiated cells
adipocyte
1
osteoblast
1
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