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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
367
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
2
August, 2021
Organism
12
Homo sapiens
Biosample type
8
cell line
4
tissue
in vitro differentiated cells
Organ
12
pancreas
8
epithelium
Project
12
AMP
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
2
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
STARR-seq
ChIP-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
12 results
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MeRIP-seq
Capture-C
cell line
EndoC_BH1
6
2
tissue
islet of Langerhans
4