Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1732
ChIP-seq
1472
total RNA-seq
485
ATAC-seq
357
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
56
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
2
July, 2019
1
August, 2017
1
November, 2018
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
fastq
Organism
14
Homo sapiens
Biosample type
8
tissue
6
cell line
Organ
12
pancreas
7
epithelium
blood vessel
1
brain
1
kidney
1
vasculature
1
vein
Project
14
AMP
Genome assembly (visualization)
4
hg19
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
4
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
STARR-seq
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
14 results
search-icon
table-tab-icon
Clear Filters
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
4
1
frontal cortex
1
kidney
1
pancreas
1
cell line
EndoC_BH1
6
Download