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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1466
total RNA-seq
485
ATAC-seq
363
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
56
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
1
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
2
July, 2019
1
August, 2017
1
March, 2023
1
November, 2018
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
fastq
Organism
14
Homo sapiens
Biosample type
8
tissue
6
cell line
1
stem cell
Organ
12
pancreas
7
epithelium
blood vessel
1
brain
1
kidney
1
vasculature
1
vein
Project
14
AMP
1
community
Genome assembly (visualization)
4
hg19
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
4
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
assay_title!
STARR-seq
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
15 results
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MeRIP-seq
FAIRE-seq
CRISPRi RNA-seq
tissue
islet of Langerhans
4
1
frontal cortex
1
kidney
1
pancreas
1
cell line
EndoC_BH1
6
stem cell
SB Ad3.1
1
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