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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
111
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
10
November, 2020
7
August, 2021
2
December, 2019
2
February, 2023
1
August, 2022
Available data
85
txt
27
fastq
21
zippedFastqFolder
2
tsv
1
bed bed3+
Organism
179
Homo sapiens
Biosample type
119
tissue
56
primary cell
6
cell line
Organ
84
bone element
21
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
7
epithelium
1
adipose tissue
1
connective tissue
1
musculature of body
Project
105
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
89
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
90
inconsistent ontology term
31
audit script error
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
181 results
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RNA microarray
snATAC-seq
MeRIP-seq
tissue
bone element
84
islet of Langerhans
7
4
lung
10
kidney
6
pancreas
4
+ See 4 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
6
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