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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
237
total RNA-seq
134
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
0
MeRIP-seq
Assay category
134
Transcription
61
DNA accessibility
Date released
48
July, 2018
44
April, 2018
25
September, 2020
18
May, 2022
15
September, 2018
12
February, 2021
8
October, 2017
7
August, 2020
5
August, 2017
5
September, 2017
3
August, 2018
3
June, 2018
1
March, 2019
1
November, 2018
Available data
281
bam
278
bed narrowPeak
242
bigWig
225
tsv
195
fastq
91
zippedFastqFolder
64
xls
27
bigBed narrowPeak
16
txt
12
bed bed3
8
csv
7
bed bedgraph
4
bed bed3+
2
bed broadPeak
Organism
195
Homo sapiens
Biosample type
160
primary cell
35
tissue
Organ
131
pancreas
98
epithelium
5
connective tissue
2
adipose tissue
1
brain
1
liver
1
spleen
Project
151
AMP
44
HPAP
Genome assembly (visualization)
147
hg19
140
GRCh38
Lab
131
AMP-T2D consortium
44
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
195 results
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single cell RNA-seq
ATAC-seq
primary cell
Langerhans cell
34
pancreatic alpha cell
12
13
pancreatic beta cell
12
10
pancreatic acinar cell
9
5
pancreatic ductal cell
9
4
+ See 12 more…
tissue
islet of Langerhans
6
20
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
right lobe of liver
1
+ See 2 more…
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