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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
75
DNA methylation
5
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
14
July, 2019
10
August, 2017
10
November, 2020
8
November, 2018
6
February, 2021
1
October, 2019
Available data
41
zippedFastqFolder
23
bam
22
bigWig
19
fastq
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
5
bed narrowPeak
5
bigBed narrowPeak
1
tar
Organism
90
Homo sapiens
Biosample type
48
primary cell
35
tissue
7
cell line
Organ
63
pancreas
54
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
3
blood vessel
3
vasculature
2
spleen
1
brain
1
kidney
1
limb
1
musculature of body
1
vein
Project
47
HPAP
43
AMP
Genome assembly (visualization)
17
GRCh38
5
hg19
Lab
47
Klaus Kaestner, Upenn
33
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_title!
whole genome sequencing assay
BIOSAMPLE
ASSAY
90 results
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WGBS
MeRIP-seq
FAIRE-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
4
1
heart left ventricle
4
adipose tissue
3
liver
3
pancreas
2
1
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cell line
EndoC_BH1
6
HepG2
1
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