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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
21
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
84
February, 2021
15
July, 2019
10
November, 2020
6
August, 2017
2
December, 2019
1
August, 2021
Available data
84
txt
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
2
tsv
Organism
117
Homo sapiens
Biosample type
102
tissue
10
primary cell
6
cell line
Organ
84
bone element
13
epithelium
12
pancreas
6
kidney
5
musculature of body
2
brain
2
connective tissue
2
heart
2
liver
1
adipose tissue
1
eye
1
pericardium
1
vasculature
Project
118
AMP
Genome assembly (visualization)
19
hg19
Lab
108
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
92
inconsistent ontology term
2
audit script error
assay_title!
whole genome sequencing assay
BIOSAMPLE
ASSAY
118 results
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RNA microarray
RRBS
MeRIP-seq
tissue
bone element
84
islet of Langerhans
1
4
skeletal muscle tissue
4
brain
1
heart left ventricle
1
+ See 7 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
EndoC_BH1
6
See all biosamples
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