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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
4
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
6
November, 2020
1
August, 2021
1
December, 2018
1
November, 2019
1
October, 2019
Available data
2
bedpe bed3+
2
hic
1
bed bed3+
1
bigWig
1
fastq
1
hdf5
Organism
10
Homo sapiens
Biosample type
20
tissue
10
cell line
10
primary cell
4
in vitro differentiated cells
Organ
8
pancreas
7
epithelium
2
liver
Project
10
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
6
Rohit N. Kulkarni, M.D., Ph.D.
3
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
whole genome sequencing assay
BIOSAMPLE
ASSAY
10 results
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MeRIP-seq
Hi-C
cell line
EndoC_BH1
6
1
HepG2
2
Panc1
1
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