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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1289
ChIP-seq
1280
total RNA-seq
331
ATAC-seq
182
single cell RNA-seq
181
DNase-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
181
DNA accessibility
Target of assay
control
5
nucleotide modification
Date released
163
June, 2019
9
November, 2018
6
October, 2019
5
November, 2020
3
August, 2017
Available data
180
bam
180
bed narrowPeak
180
bigBed narrowPeak
180
bigWig
178
bed broadPeak
178
bigBed broadPeak
177
bed bed3+
11
fastq
Organism
186
Homo sapiens
Biosample type
180
tissue
primary cell
5
cell line
1
in vitro differentiated cells
Organ
69
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
13
pancreas
5
blood vessel
5
vasculature
4
artery
4
epithelium
4
liver
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
186
AMP
Genome assembly (visualization)
180
GRCh38
164
hg19
Lab
181
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
4
inconsistent ontology term
assay_title!
whole genome sequencing assay
target.investigated_as!
control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
186 results
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DNase-seq
MeRIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
cell line
EndoC_BH1
3
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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