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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
31
DNA accessibility
Target of assay
3
control
3
nucleotide modification
Date released
16
May, 2021
9
February, 2021
6
November, 2020
2
March, 2020
2
October, 2019
1
January, 2018
1
November, 2019
Available data
12
bam
12
bed narrowPeak
5
bigWig
2
bigBed narrowPeak
1
bed bed3
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
37
Homo sapiens
Biosample type
442
tissue
231
primary cell
43
in vitro differentiated cells
37
cell line
Organ
26
epithelium
26
pancreas
8
artery
8
blood vessel
8
heart
8
vasculature
1
blood
1
bodily fluid
1
kidney
1
liver
Project
37
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
31
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
25
inconsistent ontology term
1
inconsistent replicate
assay_title!
Capture-C
BIOSAMPLE
ASSAY
37 results
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ATAC-seq
MeRIP-seq
DNase-seq
cell line
EndoC_BH1
19
6
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
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