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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
FAIRE-seq
Assay category
26
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
23
June, 2019
10
November, 2020
2
October, 2019
1
August, 2017
Available data
23
bam
23
bed bed3+
23
bed broadPeak
23
bed narrowPeak
23
bigBed broadPeak
23
bigBed narrowPeak
23
bigWig
Organism
36
Homo sapiens
Biosample type
21
tissue
9
primary cell
6
cell line
Organ
14
epithelium
12
pancreas
10
brain
9
kidney
3
heart
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
36
AMP
Genome assembly (visualization)
207
GRCh38
hg19
Lab
26
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
36 results
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DNase-seq
MeRIP-seq
tissue
islet of Langerhans
4
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
+ See 11 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
cell line
EndoC_BH1
6
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