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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
2
DNA accessibility
Target of assay
3
control
3
nucleotide modification
Date released
6
November, 2020
2
October, 2019
1
October, 2022
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
txt
Organism
8
Homo sapiens
Biosample type
182
tissue
31
primary cell
9
cell line
1
in vitro differentiated cells
Organ
7
epithelium
7
pancreas
1
kidney
Project
9
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
6
Rohit N. Kulkarni, M.D., Ph.D.
3
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
Capture-C
BIOSAMPLE
ASSAY
9 results
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MeRIP-seq
DNase-seq
MPRA
cell line
EndoC_BH1
6
MIN6
1
Panc1
1
glomerular visceral epithelial cell
1
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