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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1286
total RNA-seq
331
ATAC-seq
181
DNase-seq
176
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
181
DNA accessibility
16
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
163
June, 2019
16
July, 2019
10
November, 2020
9
November, 2018
6
October, 2019
3
August, 2017
Available data
196
bam
196
bigWig
180
bed narrowPeak
180
bigBed narrowPeak
178
bed broadPeak
178
bigBed broadPeak
177
bed bed3+
16
tsv
11
fastq
Organism
207
Homo sapiens
Biosample type
198
tissue
primary cell
8
cell line
1
in vitro differentiated cells
Organ
70
kidney
36
limb
33
musculature of body
31
brain
28
heart
20
pancreas
18
ureter
7
epithelium
7
liver
5
blood vessel
5
connective tissue
5
vasculature
4
adipose tissue
4
artery
3
eye
2
nerve
1
spleen
Project
207
AMP
Genome assembly (visualization)
196
GRCh38
180
hg19
Lab
197
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
207 results
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DNase-seq
small RNA-seq
MeRIP-seq
tissue
heart
18
1
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 46 more…
cell line
EndoC_BH1
6
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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