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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
8
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
4
June, 2019
2
November, 2018
1
August, 2017
1
October, 2019
Available data
8
bam
8
bed narrowPeak
8
bigBed narrowPeak
8
bigWig
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
fastq
Organism
18
Homo sapiens
Biosample type
11
tissue
7
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
25
epithelium
18
pancreas
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
18
AMP
Genome assembly (visualization)
8
GRCh38
6
hg19
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
8
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
18 results
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MeRIP-seq
DNase-seq
tissue
islet of Langerhans
4
1
body of pancreas
4
pancreas
2
cell line
EndoC_BH1
6
Panc1
1
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