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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1831ChIP-seq
  • 1532total RNA-seq
  • 520ATAC-seq
  • 313single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 75DNA methylation
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 41May, 2022
  • 12July, 2019
  • 10November, 2020
  • 9August, 2017
  • 7November, 2018
  • 6February, 2021
Available data
  • 41zippedFastqFolder
  • 18bam
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 17bigWig
  • 17fastq
  • 6tsv
Organism
  • 85Homo sapiens
Biosample type
  • 47primary cell
  • 31tissue
  • 7cell line
Organ
  • 61pancreas
  • 53epithelium
  • 8heart
  • 6adipose tissue
  • 6connective tissue
  • 5liver
  • 2blood vessel
  • 2spleen
  • 2vasculature
  • 1limb
  • 1musculature of body
Project
  • 47HPAP
  • 38AMP
Genome assembly (visualization)
  • 17GRCh38
Lab
  • 47Klaus Kaestner, Upenn
  • 28AMP-T2D consortium
  • 10Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 6inconsistent ontology term
BIOSAMPLE
ASSAY

85 results

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Clear Filters
WGBS
MeRIP-seq
primary cell
pancreatic alpha cell31
pancreatic beta cell16
tissue
heart left ventricle4
islet of Langerhans4
adipose tissue3
liver3
subcutaneous abdominal adipose tissue3
cell line
EndoC_BH16
HepG21
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