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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
974
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
12
July, 2019
10
November, 2020
5
August, 2017
Available data
41
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
fastq
6
tsv
Organism
68
Homo sapiens
Biosample type
41
primary cell
21
tissue
6
cell line
Organ
51
pancreas
47
epithelium
8
heart
3
adipose tissue
3
connective tissue
3
liver
2
blood vessel
2
vasculature
1
limb
1
musculature of body
Project
41
HPAP
27
AMP
Genome assembly (visualization)
8
GRCh38
Lab
41
Klaus Kaestner, Upenn
17
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
68 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
subcutaneous abdominal adipose tissue
3
aorta
2
heart right ventricle
2
+ See 5 more…
cell line
EndoC_BH1
6
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