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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1533
total RNA-seq
1496
ChIP-seq
531
ATAC-seq
360
single cell RNA-seq
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
Target of assay
control
5
nucleotide modification
Date released
41
May, 2022
12
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
5
November, 2020
Available data
41
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
Organism
80
Homo sapiens
Biosample type
47
primary cell
29
tissue
4
cell line
Organ
56
pancreas
50
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
33
AMP
Genome assembly (visualization)
17
GRCh38
Lab
47
Klaus Kaestner, Upenn
28
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
assay_title!
DNase-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
80 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 9 more…
cell line
EndoC_BH1
3
HepG2
1
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