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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1702
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
CRISPR genome editing followed by sgRNA sequencing
Assay category
28
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
12
July, 2019
9
August, 2017
7
November, 2018
4
November, 2020
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
Organism
32
Homo sapiens
Biosample type
31
tissue
1
cell line
Organ
62
pancreas
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
32
AMP
Genome assembly (visualization)
17
GRCh38
Lab
28
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
epithelium
BIOSAMPLE
ASSAY
32 results
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WGBS
MeRIP-seq
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 9 more…
cell line
HepG2
1
See all biosamples
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