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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
12
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
6
February, 2021
4
August, 2021
Available data
41
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
2
bed bed3+
Organism
89
Homo sapiens
Biosample type
47
primary cell
31
tissue
9
cell line
2
in vitro differentiated cells
Organ
63
pancreas
55
epithelium
8
connective tissue
8
heart
6
adipose tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
42
AMP
Genome assembly (visualization)
17
GRCh38
2
hg19
Lab
47
Klaus Kaestner, Upenn
30
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent ontology term
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
89 results
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WGBS
MeRIP-seq
Capture-C
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 9 more…
cell line
EndoC_BH1
6
2
HepG2
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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