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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
75
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
63
May, 2022
33
February, 2021
16
January, 2021
12
July, 2019
10
April, 2020
10
August, 2021
10
November, 2020
9
August, 2017
7
November, 2018
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
6
tsv
3
bed bed3+
1
txt
Organism
172
Homo sapiens
Biosample type
103
primary cell
59
tissue
9
cell line
2
in vitro differentiated cells
Organ
74
pancreas
55
epithelium
10
lung
8
blood
8
bodily fluid
8
connective tissue
8
heart
6
adipose tissue
6
kidney
5
liver
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
95
HPAP
50
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
17
GRCh38
3
hg19
Lab
95
Klaus Kaestner, Upenn
32
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
Struan F.A. Grant, CHOP
Audit category:
29
audit script error
8
inconsistent ontology term
BIOSAMPLE
ASSAY
173 results
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snATAC-seq
WGBS
MeRIP-seq
Capture-C
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
4
lung
10
kidney
6
pancreas
4
2
heart left ventricle
4
+ See 12 more…
cell line
EndoC_BH1
6
2
HepG2
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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