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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1702
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
193
DNA accessibility
28
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
173
June, 2019
16
November, 2018
14
August, 2017
12
July, 2019
5
November, 2020
5
October, 2019
Available data
210
bam
209
bigWig
192
bed narrowPeak
192
bigBed narrowPeak
190
bed broadPeak
190
bigBed broadPeak
188
bed bed3+
23
fastq
17
bed bedMethyl
17
bigBed bedMethyl
Organism
225
Homo sapiens
Biosample type
209
tissue
13
primary cell
2
cell line
1
in vitro differentiated cells
Organ
81
kidney
epithelium
69
pancreas
38
heart
37
limb
34
musculature of body
32
brain
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
225
AMP
Genome assembly (visualization)
207
GRCh38
175
hg19
Lab
221
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
225 results
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DNase-seq
WGBS
MeRIP-seq
tissue
heart
18
1
muscle of arm
17
brain
14
muscle of leg
13
1
kidney
13
+ See 44 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
cell line
HepG2
1
Panc1
1
in vitro differentiated cells
adipocyte
1
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