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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
26
Hi-C
18
small RNA-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
WGBS
Assay category
193
DNA accessibility
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
173
June, 2019
9
November, 2018
5
August, 2017
5
November, 2020
5
October, 2019
Available data
192
bam
192
bed narrowPeak
192
bigBed narrowPeak
192
bigWig
190
bed broadPeak
190
bigBed broadPeak
188
bed bed3+
12
fastq
Organism
197
Homo sapiens
Biosample type
182
tissue
13
primary cell
1
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
epithelium
18
pancreas
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
197
AMP
Genome assembly (visualization)
190
GRCh38
175
hg19
Lab
193
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
organ_slims!
epithelium
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
197 results
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DNase-seq
MeRIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
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