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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1589
ChIP-seq
928
total RNA-seq
403
ATAC-seq
289
single cell RNA-seq
184
DNase-seq
85
RNA microarray
84
snATAC-seq
52
pCHi-C
25
Hi-C
22
WGBS
15
small RNA-seq
14
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
184
DNA accessibility
22
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
167
June, 2019
15
November, 2018
12
July, 2019
7
August, 2017
5
October, 2019
4
November, 2020
Available data
199
bam
198
bigWig
183
bed narrowPeak
183
bigBed narrowPeak
181
bed broadPeak
181
bigBed broadPeak
180
bed bed3+
18
fastq
15
bed bedMethyl
15
bigBed bedMethyl
Organism
210
Homo sapiens
Biosample type
201
tissue
7
primary cell
2
cell line
Organ
81
kidney
epithelium
69
pancreas
38
heart
37
limb
34
musculature of body
32
brain
18
ureter
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
210
AMP
Genome assembly (visualization)
196
GRCh38
167
hg19
Lab
206
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
2
inconsistent ontology term
organ_slims!
epithelium
connective tissue
BIOSAMPLE
ASSAY
210 results
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Clear Filters
DNase-seq
WGBS
MeRIP-seq
tissue
heart
18
1
muscle of arm
17
brain
14
muscle of leg
13
1
kidney
13
+ See 41 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
cardiac muscle cell
1
skeletal muscle cell
1
+ See 1 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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