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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1718
ChIP-seq
1059
total RNA-seq
506
ATAC-seq
359
single cell RNA-seq
185
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
52
pCHi-C
33
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
185
DNA accessibility
69
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
163
June, 2019
41
May, 2022
15
November, 2018
12
July, 2019
10
November, 2020
10
October, 2019
7
August, 2017
6
February, 2021
Available data
198
bam
197
bigWig
182
bed narrowPeak
182
bigBed narrowPeak
179
bed broadPeak
179
bigBed broadPeak
178
bed bed3+
41
zippedFastqFolder
24
fastq
15
bed bedMethyl
15
bigBed bedMethyl
6
tsv
Organism
264
Homo sapiens
Biosample type
183
tissue
72
primary cell
9
cell line
Organ
81
kidney
72
epithelium
69
pancreas
38
heart
37
limb
34
musculature of body
32
brain
ureter
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
217
AMP
47
HPAP
Genome assembly (visualization)
195
GRCh38
160
hg19
Lab
207
AMP-T2D consortium
47
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
organ_slims!
ureter
connective tissue
BIOSAMPLE
ASSAY
264 results
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Clear Filters
DNase-seq
WGBS
MeRIP-seq
tissue
heart
18
1
muscle of arm
17
brain
14
muscle of leg
13
1
kidney
13
+ See 38 more…
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 16 more…
cell line
EndoC_BH1
6
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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