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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
47
DNA methylation
19
DNA accessibility
Target of assay
3
control
3
nucleotide modification
Date released
41
May, 2022
14
June, 2019
6
February, 2021
6
November, 2020
5
October, 2019
Available data
41
zippedFastqFolder
17
bam
17
bed narrowPeak
17
bigBed narrowPeak
17
bigWig
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
fastq
6
tsv
Organism
72
Homo sapiens
Biosample type
65
primary cell
7
cell line
Organ
81
kidney
72
epithelium
69
pancreas
38
heart
37
limb
34
musculature of body
32
brain
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
47
HPAP
25
AMP
Genome assembly (visualization)
17
GRCh38
11
hg19
Lab
47
Klaus Kaestner, Upenn
19
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
inconsistent ontology term
BIOSAMPLE
ASSAY
72 results
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WGBS
DNase-seq
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
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cell line
EndoC_BH1
6
glomerular visceral epithelial cell
1
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