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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
96
DNA methylation
5
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
29
July, 2019
16
August, 2017
10
November, 2020
8
November, 2018
6
February, 2021
1
October, 2019
Available data
41
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bam
23
fastq
22
bigWig
6
tsv
5
bed narrowPeak
5
bigBed narrowPeak
1
tar
Organism
111
Homo sapiens
Biosample type
58
primary cell
46
tissue
7
cell line
Organ
65
pancreas
60
epithelium
10
heart
7
connective tissue
7
liver
6
adipose tissue
6
musculature of body
5
kidney
4
vasculature
3
blood vessel
3
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
64
AMP
47
HPAP
Genome assembly (visualization)
24
hg19
17
GRCh38
Lab
54
AMP-T2D consortium
47
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
111 results
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WGBS
RRBS
MeRIP-seq
FAIRE-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 8 more…
tissue
islet of Langerhans
1
4
1
heart left ventricle
4
1
liver
3
1
pancreas
2
1
1
skeletal muscle tissue
4
+ See 14 more…
cell line
EndoC_BH1
6
HepG2
1
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