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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
89
DNA accessibility
75
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
63
May, 2022
33
February, 2021
16
January, 2021
14
July, 2019
10
April, 2020
10
August, 2017
10
November, 2020
8
November, 2018
6
August, 2021
2
February, 2023
1
August, 2022
1
October, 2019
Available data
62
zippedFastqFolder
46
fastq
23
bam
22
bigWig
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
5
bed narrowPeak
5
bigBed narrowPeak
1
bed bed3+
1
tar
1
txt
Organism
173
Homo sapiens
Biosample type
104
primary cell
63
tissue
7
cell line
Organ
74
pancreas
54
epithelium
10
lung
8
blood
8
bodily fluid
8
heart
7
kidney
6
adipose tissue
6
connective tissue
5
liver
3
blood vessel
3
vasculature
2
musculature of body
2
spleen
1
brain
1
limb
1
vein
Project
95
HPAP
51
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
17
GRCh38
6
hg19
Lab
95
Klaus Kaestner, Upenn
35
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
6
inconsistent ontology term
BIOSAMPLE
ASSAY
174 results
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snATAC-seq
WGBS
MeRIP-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
7
4
1
lung
10
kidney
6
1
pancreas
4
2
1
heart left ventricle
4
+ See 13 more…
cell line
EndoC_BH1
6
HepG2
1
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