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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
ATAC-seq
263
single cell RNA-seq
253
ChIP-seq
245
total RNA-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
78
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
18
July, 2019
13
August, 2017
10
November, 2020
6
February, 2021
Available data
41
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
21
fastq
bam
17
bigWig
6
tsv
Organism
88
Homo sapiens
Biosample type
57
primary cell
25
tissue
6
cell line
Organ
59
epithelium
59
pancreas
6
liver
5
connective tissue
5
musculature of body
4
adipose tissue
4
heart
4
kidney
2
brain
1
eye
1
pericardium
1
vasculature
Project
47
HPAP
41
AMP
Genome assembly (visualization)
19
hg19
Lab
47
Klaus Kaestner, Upenn
31
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
88 results
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WGBS
RRBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 7 more…
tissue
islet of Langerhans
1
4
liver
3
1
skeletal muscle tissue
4
heart left ventricle
2
1
subcutaneous abdominal adipose tissue
3
+ See 6 more…
cell line
EndoC_BH1
6
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