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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
517
ATAC-seq
212
DNase-seq
212
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
69
WGBS
34
Hi-C
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
69
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
12
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
5
August, 2021
Available data
41
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
tsv
Organism
84
Homo sapiens
Biosample type
41
primary cell
31
tissue
12
cell line
Organ
55
pancreas
47
epithelium
8
heart
7
liver
6
adipose tissue
6
connective tissue
2
blood vessel
2
kidney
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
43
AMP
41
HPAP
Genome assembly (visualization)
17
GRCh38
Lab
41
Klaus Kaestner, Upenn
28
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
5
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
84 results
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WGBS
MeRIP-seq
STARR-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 9 more…
cell line
EndoC_BH1
6
HepG2
1
2
HEK293T
2
Synthesized DNA
1
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