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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
0
MeRIP-seq
Assay category
47
DNA methylation
10
3D chromatin structure
2
Transcription
Date released
41
May, 2022
6
February, 2021
6
July, 2019
3
October, 2022
1
March, 2020
1
March, 2023
1
October, 2019
Available data
41
zippedFastqFolder
8
tsv
6
bigWig
6
fastq
6
hic
4
bed bed3+
4
bedpe bed3+
4
hdf5
3
cool
2
bam
Organism
59
Homo sapiens
Biosample type
63
tissue
59
primary cell
11
cell line
4
in vitro differentiated cells
Organ
54
epithelium
50
pancreas
4
blood vessel
4
vasculature
3
brain
2
connective tissue
2
vein
1
adipose tissue
1
liver
1
musculature of body
Project
50
HPAP
8
AMP
1
ITG
Genome assembly (visualization)
11
hg19
3
GRCh38
Lab
50
Klaus Kaestner, Upenn
8
AMP-T2D consortium
1
ITG
Audit category:
4
audit script error
BIOSAMPLE
ASSAY
59 results
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WGBS
Hi-C
small RNA-seq
primary cell
pancreatic alpha cell
31
1
pancreatic beta cell
16
1
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
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