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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1336
total RNA-seq
471
ATAC-seq
222
single cell RNA-seq
212
DNase-seq
87
RNA microarray
40
pCHi-C
30
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
49
DNA methylation
18
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
45
July, 2019
15
August, 2017
10
November, 2020
7
November, 2018
Available data
36
bam
36
bed bedMethyl
36
bigBed bedMethyl
35
bigWig
18
tsv
15
fastq
Organism
77
Homo sapiens
Biosample type
58
tissue
12
primary cell
7
cell line
Organ
18
pancreas
12
epithelium
11
heart
10
connective tissue
10
liver
9
adipose tissue
8
musculature of body
6
brain
5
kidney
3
vasculature
2
blood vessel
2
spleen
1
eye
1
limb
1
pericardium
Project
77
AMP
47
HPAP
Genome assembly (visualization)
37
hg19
35
GRCh38
Lab
67
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
77 results
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WGBS
RRBS
small RNA-seq
MeRIP-seq
tissue
heart left ventricle
4
1
islet of Langerhans
1
4
liver
3
1
1
skeletal muscle tissue
4
1
body of pancreas
2
2
+ See 22 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 7 more…
cell line
EndoC_BH1
6
HepG2
1
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