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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
96
DNA methylation
18
Transcription
Target of assay
5
control
nucleotide modification
Date released
45
July, 2019
41
May, 2022
15
August, 2017
7
November, 2018
6
February, 2021
5
November, 2020
Available data
41
zippedFastqFolder
36
bam
36
bed bedMethyl
36
bigBed bedMethyl
35
bigWig
24
tsv
21
fastq
Organism
119
Homo sapiens
Biosample type
59
primary cell
56
tissue
4
cell line
Organ
60
pancreas
56
epithelium
11
heart
10
connective tissue
10
liver
9
adipose tissue
8
musculature of body
6
brain
5
kidney
3
vasculature
2
blood vessel
2
spleen
1
eye
1
limb
1
pericardium
Project
72
AMP
47
HPAP
Genome assembly (visualization)
37
hg19
35
GRCh38
Lab
67
AMP-T2D consortium
47
Klaus Kaestner, Upenn
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
5
inconsistent ontology term
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
119 results
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WGBS
RRBS
small RNA-seq
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 9 more…
tissue
heart left ventricle
4
1
liver
3
1
1
skeletal muscle tissue
4
1
body of pancreas
2
2
adipose tissue
3
+ See 22 more…
cell line
EndoC_BH1
3
HepG2
1
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