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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
18
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
22
July, 2019
10
November, 2020
7
August, 2017
6
February, 2021
Available data
41
zippedFastqFolder
36
bam
35
bigWig
24
tsv
bed bedMethyl
17
bigBed bedMethyl
17
fastq
Organism
86
Homo sapiens
Biosample type
49
primary cell
31
tissue
6
cell line
Organ
59
pancreas
53
epithelium
7
adipose tissue
7
connective tissue
7
liver
4
brain
3
heart
2
musculature of body
1
blood vessel
1
kidney
1
vasculature
Project
47
HPAP
39
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
47
Klaus Kaestner, Upenn
29
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
86 results
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WGBS
small RNA-seq
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
islet of Langerhans
4
liver
3
1
right lobe of liver
1
2
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 14 more…
cell line
EndoC_BH1
6
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