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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1801
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
368
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
68
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA methylation
18
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
30
July, 2019
10
November, 2020
9
August, 2017
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
29
bam
28
bigWig
24
tsv
10
bed bedMethyl
10
bigBed bedMethyl
10
fastq
Organism
96
Homo sapiens
Biosample type
49
primary cell
41
tissue
6
cell line
Organ
59
pancreas
53
epithelium
9
adipose tissue
9
connective tissue
9
heart
7
liver
4
brain
3
musculature of body
2
blood vessel
2
vasculature
1
kidney
1
limb
Project
49
AMP
47
HPAP
Genome assembly (visualization)
28
GRCh38
18
hg19
Lab
47
Klaus Kaestner, Upenn
39
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
96 results
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WGBS
small RNA-seq
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
heart left ventricle
4
islet of Langerhans
4
liver
3
1
adipose tissue
3
right lobe of liver
1
2
+ See 17 more…
cell line
EndoC_BH1
6
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