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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1338
total RNA-seq
1319
ChIP-seq
508
ATAC-seq
368
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
54
pCHi-C
30
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
70
DNA methylation
15
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
26
July, 2019
10
November, 2020
6
August, 2017
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
32
bam
31
bigWig
21
tsv
16
bed bedMethyl
16
bigBed bedMethyl
15
fastq
Organism
95
Homo sapiens
Biosample type
49
primary cell
40
tissue
6
cell line
Organ
63
pancreas
53
epithelium
9
adipose tissue
9
connective tissue
9
heart
liver
4
brain
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
48
AMP
47
HPAP
Genome assembly (visualization)
31
GRCh38
15
hg19
Lab
47
Klaus Kaestner, Upenn
38
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
95 results
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WGBS
small RNA-seq
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
+ See 17 more…
cell line
EndoC_BH1
6
See all biosamples
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