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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
153
ChIP-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
0
MeRIP-seq
Assay category
6
DNA methylation
3
Transcription
Date released
6
August, 2017
3
July, 2019
2
March, 2020
1
August, 2018
1
February, 2021
1
May, 2021
Available data
6
bam
5
bigWig
5
tsv
4
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bedpe bed3+
Organism
14
Homo sapiens
Biosample type
9
tissue
3
primary cell
1
in vitro differentiated cells
1
stem cell
Organ
64
pancreas
53
epithelium
14
connective tissue
12
heart
11
adipose tissue
11
liver
6
brain
4
eye
4
musculature of body
3
blood vessel
3
kidney
3
spleen
3
vasculature
2
intestine
2
thymus
1
adrenal gland
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
limb
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
urinary bladder
Project
13
AMP
1
T1D
Genome assembly (visualization)
5
GRCh38
4
hg19
Lab
13
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
14 results
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WGBS
pCHi-C
small RNA-seq
tissue
adipose tissue
3
1
subcutaneous abdominal adipose tissue
3
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
adult endothelial progenitor cell
1
mesenchymal stem cell of adipose
1
osteoblast
1
in vitro differentiated cells
white fat cell
1
stem cell
mesenchymal stem cell
1
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