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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1422
total RNA-seq
520
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
66
snATAC-seq
40
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
66
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
63
May, 2022
33
February, 2021
12
July, 2019
10
April, 2020
10
November, 2020
9
August, 2017
7
November, 2018
6
August, 2021
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
6
tsv
1
bed bed3+
1
txt
Organism
150
Homo sapiens
Biosample type
95
primary cell
49
tissue
7
cell line
Organ
62
pancreas
53
epithelium
10
lung
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
95
HPAP
46
AMP
T1D
10
LungMap
Genome assembly (visualization)
17
GRCh38
1
hg19
Lab
95
Klaus Kaestner, Upenn
30
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
6
inconsistent ontology term
award.project!
T1D
BIOSAMPLE
ASSAY
151 results
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WGBS
snATAC-seq
MeRIP-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
lung
10
kidney
6
islet of Langerhans
1
4
heart left ventricle
4
adipose tissue
3
+ See 12 more…
cell line
EndoC_BH1
6
HepG2
1
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