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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1336
total RNA-seq
471
ATAC-seq
222
single cell RNA-seq
212
DNase-seq
87
RNA microarray
40
pCHi-C
30
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
28
DNA methylation
8
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
12
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
6
August, 2021
1
August, 2022
1
May, 2022
1
October, 2022
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
2
txt
1
bed bed3+
Organism
46
Homo sapiens
Biosample type
39
tissue
8
cell line
Organ
15
pancreas
8
heart
6
adipose tissue
6
connective tissue
6
epithelium
6
kidney
5
liver
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
95
HPAP
47
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
17
GRCh38
1
hg19
Lab
31
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Katalin Susztak, Upenn
Audit category:
6
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
47 results
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WGBS
MeRIP-seq
snATAC-seq
MPRA
tissue
kidney
6
islet of Langerhans
4
1
heart left ventricle
4
adipose tissue
3
liver
3
+ See 11 more…
cell line
EndoC_BH1
6
HepG2
1
MIN6
1
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