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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ATAC-seq
293
ChIP-seq
146
total RNA-seq
122
single cell RNA-seq
87
RNA microarray
39
pCHi-C
30
Hi-C
21
RRBS
10
MeRIP-seq
10
WGBS
8
snATAC-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
DNase-seq
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
10
DNA methylation
8
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
7
August, 2017
6
August, 2021
3
July, 2019
1
August, 2022
1
May, 2022
Available data
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
1
bed bed3+
1
txt
Organism
28
Homo sapiens
Biosample type
22
tissue
6
cell line
Organ
11
pancreas
6
epithelium
6
kidney
4
adipose tissue
4
connective tissue
4
liver
2
heart
1
musculature of body
Project
95
HPAP
28
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
12
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Katalin Susztak, Upenn
Audit category:
6
inconsistent ontology term
2
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
28 results
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MeRIP-seq
WGBS
snATAC-seq
tissue
kidney
6
islet of Langerhans
4
1
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
+ See 3 more…
cell line
EndoC_BH1
6
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